EST Assemblies

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MAGIC Sanger Sequence Viewer

MAGIC Sequence Viewer allows the view of base calls, phred scores, and 6-frame translations for traditional EST sequences. One can download selected data in fasta format and BLAST search NCBI databases with individual sequences. Library discriptions can be found here

MAGIC Sanger GeneDiscovery

MAGIC GeneDiscovery allows the user to explore assemblies of traditional ESTs (read alignments, BLAST-based annotations etc.), explore SNPs, 3'/5' EST content of contigs, standalone BLAST query/visualization, AT/GC content

NG-MAGIC Sanger-454 hybrid GeneDiscovery

NG-MAGIC GeneDiscovery is an extension of MAGIC GeneDiscovery that allows exporation of very large, hybrid sanger-454 assemblies

Local Blast

Blast to Consensus Sequences allows the user to enter sequences that may be Blasted against the set of EST consensus sequence assemblies for all species included in the Ancestral Angiosperm Project (Amborella trichopoda, Aristolochia fimbriata, Liriodendron tulipifera, Nuphar advena, Persea americana, Saruma henryi, and Zamia vazquezii). See assembly descriptions here .  Go to NG-Magic assemblies (choose from list here)  to see read assemblies . 

Illumina Data

Please download the illumina sequence data from the following link: ancangio.uga.edu/illumina-data/

Contig count based on length:

Taxon 100-499 500-999 1000-2000 >2000 Total
Zamia furfuracea 35279 10720 4148 189 50336
Persea americana 60046 38843 14612 1650 115151
Liriodendron tulipifera 106712 22712 9681 2389 141494
Aristolochia fimbriata 123176 22511 8313 1371 155371
Nuphar advena 165884 92571 25555 5763 289773
Amborella trichopoda 148646 48614 10297 837 208394