Nuphar

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Nuphar advena

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The table below shows statistics for each Nuphar cDNA library that has been sequenced using 454 pyrosequencing technology. Assemblies can be found here Add a tissue page: Click here
Illumina RNAseq data are also available normalized cDNA libraries derived from whole plants (NadWPN)and drought-stressed plants (NadDrought) here.

Number of Sequence Libraries: 
11

Leaves combo - Nad10

SFF File name: FKAHAZP02.sff
md5sum: 1cc4b9fa6510cefe2bd8f9597d05254f
 
65/35 non-green and green young leaves combo

Library Code: 
Nad10
Sequencing Date: 
Fri, 2008-11-14
Sequencing Method: 
454 FLX GS
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454GS FLX library kit

Pre meiotic flower buds - Nad11

SFF File names: 

  1. FOM578L01.sff
  2. FOM578L02.sff

md5sums: 

  1. bda5f9ca874c0024734d82e9bfdb5c14
  2. f5f7c23d3c392dc9fde2ae7bd5eca78c
Library Code: 
Nad11
Sequencing Date: 
Mon, 2009-01-05
Sequencing Method: 
454 FLX GS
Sequence Information
Number of Plates: 
1.00 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454GS FLX library kit

Root - Nad12

Tags:

SFF FIles:

  1. FMUO8WG01.sff 
  2. FMUO8WG02.sff

md5sums:

  1. d8b24eb28944263f28d0dd336aeadc6e
  2. ad95896f4379cb92f4316631938c52ff
Library Code: 
Nad12
Sequencing Date: 
Mon, 2009-01-05
Sequencing Method: 
454 FLX GS
Sequence Information
Number of Plates: 
1.00 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454GS FLX library kit

Rhizome - Nad13

SFF Files:

  1. FOTDPZF01.sff
  2. FOTDPZF02.sff

md5sums:

  1. 0152ddae1bbf418ee22f9ab397c66026
  2. f2f7b2693ce191851189c84901b2cb62
Library Code: 
Nad13
Sequencing Date: 
Mon, 2008-01-07
Sequencing Method: 
454 FLX GS
Sequence Information
Number of Plates: 
1.00 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454GS FLX library kit

Seedling early stage - Nad14

SFF FIle: FSIMIO401.sff
md5sum: cc420b48d9dc28c9c10cb35582bdcf0e
 
 

Library Code: 
Nad14
Sequencing Date: 
Tue, 2009-03-17
Sequencing Method: 
454 FLX GS
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454GS FLX library kit

Fruit (Early stage) - Nad15

SFF File: F1IQYUO01.sff
md5sum: 8d09429e07f95a65683e31a2a5ed504b  
 

Library Code: 
Nad15
Sequencing Date: 
Wed, 2009-10-21
Sequencing Method: 
454 FLX Titanium
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454 FLX Titanium shortgun library kit

Apical meristem - Nad16

SFF File: F1IQYUO02.sff
md5sum: c88034fbd35932263b36f07a6a07adbc  
 

Library Code: 
Nad16
Sequencing Date: 
Wed, 2009-10-21
Sequencing Method: 
454 FLX Titanium
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454 FLX Titanium shortgun library kit

Open flower - Nad17

SFF File name: F1VPM8D01.sff
md5sum: 26b94936c850ddbcc1cfeb77c5f0f195  

 

Library Code: 
Nad17
Sequencing Date: 
Wed, 2009-10-21
Sequencing Method: 
454 FLX Titanium
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454 FLX Titanium shortgun library kit

Post meiotic flower buds - Nad18

SFF File name: F1VPM8D02.sff
md5sum: 4dbb7f0af88efafa14cd7e1509eac7cb  
 

Library Code: 
Nad18
Sequencing Date: 
Wed, 2009-10-21
Sequencing Method: 
454 FLX Titanium
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454 FLX Titanium shortgun library kit

Pre meiotic flower buds - Nad03

Library Code: 
Nad03
Sequencing Date: 
Tue, 2008-01-01
Sequencing Method: 
Sanger
Sequence Information
Number of Plates: 
1.00 Plates

Pre meiotic flower buds - Nad03b

Library Code: 
Nad03b
Sequencing Date: 
Tue, 2008-01-01
Sequencing Method: 
Sanger
Sequence Information
Number of Plates: 
1.00 Plates

Pre meiotic flower buds - Nad03b

Library Code: 
Nad03b
Sequencing Date: 
Tue, 2008-01-01
Sequencing Method: 
Sanger
Sequence Information
Number of Plates: 
1.00 Plates

Pre meiotic flower buds - Nad03

Library Code: 
Nad03
Sequencing Date: 
Tue, 2008-01-01
Sequencing Method: 
Sanger
Sequence Information
Number of Plates: 
1.00 Plates

Rhizome - Nad13

SFF Files:

  1. FOTDPZF01.sff
  2. FOTDPZF02.sff

md5sums:

  1. 0152ddae1bbf418ee22f9ab397c66026
  2. f2f7b2693ce191851189c84901b2cb62
Library Code: 
Nad13
Sequencing Date: 
Mon, 2008-01-07
Sequencing Method: 
454 FLX GS
Sequence Information
Number of Plates: 
1.00 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454GS FLX library kit

Fruit (Early stage) - Nad15

SFF File: F1IQYUO01.sff
md5sum: 8d09429e07f95a65683e31a2a5ed504b  
 

Library Code: 
Nad15
Sequencing Date: 
Wed, 2009-10-21
Sequencing Method: 
454 FLX Titanium
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454 FLX Titanium shortgun library kit

Leaves combo - Nad10

SFF File name: FKAHAZP02.sff
md5sum: 1cc4b9fa6510cefe2bd8f9597d05254f
 
65/35 non-green and green young leaves combo

Library Code: 
Nad10
Sequencing Date: 
Fri, 2008-11-14
Sequencing Method: 
454 FLX GS
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454GS FLX library kit

Root - Nad12

Tags:

SFF FIles:

  1. FMUO8WG01.sff 
  2. FMUO8WG02.sff

md5sums:

  1. d8b24eb28944263f28d0dd336aeadc6e
  2. ad95896f4379cb92f4316631938c52ff
Library Code: 
Nad12
Sequencing Date: 
Mon, 2009-01-05
Sequencing Method: 
454 FLX GS
Sequence Information
Number of Plates: 
1.00 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454GS FLX library kit

Apical meristem - Nad16

SFF File: F1IQYUO02.sff
md5sum: c88034fbd35932263b36f07a6a07adbc  
 

Library Code: 
Nad16
Sequencing Date: 
Wed, 2009-10-21
Sequencing Method: 
454 FLX Titanium
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454 FLX Titanium shortgun library kit

Seedling early stage - Nad14

SFF FIle: FSIMIO401.sff
md5sum: cc420b48d9dc28c9c10cb35582bdcf0e
 
 

Library Code: 
Nad14
Sequencing Date: 
Tue, 2009-03-17
Sequencing Method: 
454 FLX GS
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454GS FLX library kit

Open flower - Nad17

SFF File name: F1VPM8D01.sff
md5sum: 26b94936c850ddbcc1cfeb77c5f0f195  

 

Library Code: 
Nad17
Sequencing Date: 
Wed, 2009-10-21
Sequencing Method: 
454 FLX Titanium
Sequence Information
Number of Plates: 
0.50 Plates
Library Information
Strategy: 
EST
Source: 
NON-GENOMIC
Selection: 
cDNA
Layout: 
FRAGMENT
Library Construction protocol: 
Roche 454 FLX Titanium shortgun library kit
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